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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttgagagaggctttgctttgaatgtgaactgaatattaacaactttctttgttaaatgttggaatttgtttatccttagaaccgtttttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCACCGAATTTTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAA

Basic information

species Glycine max
transcript GLYMA09G32830.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426834|gb|CA938354.1|CA938354
EST:     CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAG                         GCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
genomic: CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAGgtttgttaat ... ttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
EST: gi|7640032|gb|AW734342.1|AW734342
EST:     CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAG                         GCAACACAGGAGAGGTATAANCA-CAAAGGCGCCTATGTTGTCCTTCACCC
genomic: CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAGgtttgttaat ... ttcccttcagGCAACACAGGAGAGGTATAA-CAACAAAGGCGCCTATGTTGTCCTTCAACC
EST: gi|120494761|gb|EH222928.1|EH222928
EST:     CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAG                         GCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAAGCA
genomic: CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAGgtttgttaat ... ttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
EST: gi|7147219|gb|AW509141.1|AW509141
EST:     CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAG                         GCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
genomic: CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAGgtttgttaat ... ttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
EST: gi|120495101|gb|EH223268.1|EH223268
EST:     CTGGAAAACTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAG                         GCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA
genomic: CTGGAAAGCTGGTCACTGTTTTTAGTGCTCCAGATTACCCACAATTTCAGgtttgttaat ... ttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctttgttaaatgttggaatttgtttatccttagaaccgtttttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCACCGAATTTTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAA
                                       ccgtttttcccttc  CT-rich tract
                    aatttgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagttgagagaggctttgctttgaatgtgaactgaatattaacaactttctttgttaaatgttggaatttgtttatccttagaaccgtttttcccttcagGCAACACAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTCAACCACCGAATTTTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - -ggctttg
- - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgg