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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAA

Basic information

species Glycine max
transcript GLYMA09G30790.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G30790.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgatt-ttacctgctcttactaa---gGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAA
                                                            | || |  | |      |||  |  | |||  ||| | ||   ||   | | ||||||  | ||    | |  |||| | | ||||   ||||   | |   ||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||
-----------------------------------------------------------gtgag-tcatttatcaccaag-actgtgaaag-cttaagttgcattagggtaacattctgtttaagtgctggtggactcactcttactaactctgtttcaatagGATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAA

upper sequence: GLYMA09G30790.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttacta---agGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAA
                                                            | || |  |||     || ||| || ||||    ||  ||  | | |    | | | || | ||    |||    || ||||    |      | |    |||| ||||| || ||||||||||||||||| |||||||| ||||| || |||||||| |||
-----------------------------------------------------------gtgag-tcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtagGATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA

upper sequence: GLYMA09G30790.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAA
||| ||| ||| || |    | | |||  | |  | || |    || ||| |  | |    || |||   |  |      |    |   || |||||    | ||  | |   |        ||  |||  || |     ||||  | || || | ||||||||||||||||| || ||||| ||||| |||||||||||||| || |||||||| || 
gtatgtagtcttgcca----aagtactcctgacatttgctgcatttctgcatacggccgagaaaattacttagtctcttttattttatgatactttaaaatt-tttgaaagcta-------gaaactttaactaatcatatttatttactttttcaaagGACTATGTTGCAACCCGATGGTACCGTGCTCCTGAACTTTGTGGCTCCTTTTTCTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagaatcattcttctaaacattttgctgactgattttacctgctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAA
                                   ttttacctgctctt  CT-rich tract
                taaacatttt  TA-rich tract