1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttaaatatatttaagcctattttgtaatatattttttggaatcaatcatattgtagatatcttatgtttctgaagtgcaagtgcttaatgcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGTACTGGATGTTGGTTGTGGTACAGGAGGAGGTGACATTTACATGGCTGA
species | Glycine max |
transcript | GLYMA09G30650.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGEST: gi|6201155|gb|AW153255.1|AW153255
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGEST: gi|193497981|gb|FK463411.1|FK463411
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AACCAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGEST: gi|193731516|gb|FK665342.1|FK665342
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGEST: gi|193461027|gb|FK425836.1|FK425836
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGEST: gi|120533934|gb|EH262067.1|EH262067
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAANGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGEST: gi|193554408|gb|FK516365.1|FK516365
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
EST: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTG AAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
genomic: ACTTTATGAGAGTGTGTTTGGCCAAGGCTTTGTGAGCACAGGAGGACTTGgtatgttttg ... gcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAG
atcatattgtagatatcttatgtttctgaagtgcaagtgcttaatgcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGTACTGGATGTTGGTTGTGGTACAGGAGGAGGTGACATTTACATGGCTGA
gcttaat putative branch site (score: 4)
atatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaatatatttaagcctattttgtaatatattttttggaatcaatcatattgtagatatcttatgtttctgaagtgcaagtgcttaatgcatgtgcagAAACAACAAAGGAATTTGTGGCAAAGTTGGGATTAAAACCTGGCCAAAAAGTACTGGATGTTGGTTGTGGTACAGGAGGAGGTGACATTTACATGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG