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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataatgtacttctctctactttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcagGCCTGGAACACACAAAATTTATCGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACAC

Basic information

species Glycine max
transcript GLYMA09G27300.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27300.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G51980.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataat-gtacttctctct-actttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcagGCCTGGAACACACAAAATTTATCGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACAC
                                                ||| || |||   ||     |||  |||||| ||| | ||| |    |    | |     ||        |||| || |  |    || |      |   ||| | | |  |||      ||| |||| ||||| ||||| |   |||      | || |  ||||||| ||| |||||||| ||||| ||| | |||||||||  || |||| ||||||||||||| ||||
--------------------------------------------gcaagtattcagtatgattcctcttaacagtacttttctttgactgtcacaatagatatcgaggaac------ccttttcattcttagatgctta-----tggggttatgtctcattg------ttgttgatacagGCGTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGTCTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACAC

upper sequence: GLYMA09G27300.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataatgtacttctctctactttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcagGCCTGGAACACACAAAATTTATCGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACAC
                                                                       |  | | | |  |  | |  | | | ||     ||    |||     | |||  || |||   ||| |  || |    ||      || |||||   | |  ||||||| ||| |||| ||||||    | ||  | ||||| | ||| ||   |||||||||||||||| | |||||   ||||||| ||||||||||||||  ||
---------------------------------------------------------------------gtttcattgcacctttttcttat-aggattagcaactcgaatatagcagtaccaa-gcagatgatatcttgcctca----ctggacaatttatgat---gatattgcagGCATGGCACACTCAAAATAACACTGAATTGAGTCTCAGTGGACCCACTGGACAAGTTTATGCATTGGTTGTTGGTAATGATCTGCTCTTTGCTGGTGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcagGCCTGGAACACACAAAATTTATCGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACAC
              ataactaat  TA-rich tract