1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccatcaactaggttaaatgacttgcatatggatgatacttatatagtatatttgacattcatttctaagtttctaacactcttcatctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTGCCACATGTTGATAACTTTGCGCATATTGGGGGATTCCTCT
species | Glycine max |
transcript | GLYMA09G26610.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTT-AT-ATTGTCATCAATCTTGCCATTEST: gi|193477386|gb|FK441857.1|FK441857
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208195977|gb|GD988140.1|GD988140
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207729643|gb|GD707749.1|GD707749
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: CAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|6454385|gb|AW185068.1|AW185068
genomic: CAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|193679314|gb|FK619300.1|FK619300
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208249423|gb|GE050450.1|GE050450
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGCTTATTATTGTCATCAATCTTGCCATTEST: gi|207766706|gb|GD738334.1|GD738334
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207732792|gb|GD713537.1|GD713537
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: AGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208282257|gb|GE076855.1|GE076855
genomic: AGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208227406|gb|GE025053.1|GE025053
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|207805140|gb|GD778677.1|GD778677
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208297763|gb|GE094518.1|GE094518
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208248377|gb|GE048074.1|GE048074
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: ATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208112685|gb|GD909708.1|GD909708
genomic: ATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|193548681|gb|FK505800.1|FK505800
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208288768|gb|GE086573.1|GE086573
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTEST: gi|208261221|gb|GE058675.1|GE058675
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
agtatatttgacattcatttctaagtttctaacactcttcatctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTGCCACATGTTGATAACTTTGCGCATATTGGGGGATTCCTCT
ttctaac putative branch site (score: 1)
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcaactaggttaaatgacttgcatatggatgatacttatatagtatatttgacattcatttctaagtttctaacactcttcatctgcattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATTGGAATGTTGCCACATGTTGATAACTTTGCGCATATTGGGGGATTCCTCT
-ccatcaa
- - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca