1 5' 3' | 2 5' 3' | 3 5' 3' |
...caacaacaaaatgacctagactagattgatatccatatttaccaagagagttcattttcaattgatgtatcacacaatcttctatttatacattttttagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGC
species | Glycine max |
transcript | GLYMA09G24940.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTGGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTG TTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAG
genomic: TGCCGTGGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTGgtaagtgcat ... cattttttagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAG
gagagttcattttcaattgatgtatcacacaatcttctatttatacattttttagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGC
aattgat putative branch site (score: 4)
catttttt putative PPT
aatcttctatttatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacaacaaaatgacctagactagattgatatccatatttaccaagagagttcattttcaattgatgtatcacacaatcttctatttatacattttttagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacaa