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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacaactttcaaaatccagacttatggtcttgtcttgtgttaactattttatagaattatctcaccagtcaccacagcctggctgttcttgtgcttttggcttgaatgtttaaattacatagttattagtattggcatatcttgagaaactctatgtatgattgccctgatgatcataccctggccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTC

Basic information

species Glycine max
transcript GLYMA09G24630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6341710|gb|AW164596.1|AW164596
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|192318263|gb|FK005795.1|FK005795
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|120495740|gb|EH223907.1|EH223907
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|151395908|gb|EV265785.1|EV265785
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|213606065|gb|DB980217.1|DB980217
EST:     CAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATCCCGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGCATCAGCAAGCAAAGTAGCATACCGG
genomic: CAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|15812897|gb|BI785172.1|BI785172
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|14258831|gb|BG881739.1|BG881739
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|31456764|gb|CD398792.1|CD398792
EST:     CCCATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|254331920|gb|GR843663.1|GR843663
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|9565795|gb|BE475304.1|BE475304
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|192318264|gb|FK005796.1|FK005796
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|16342588|gb|BI968183.1|BI968183
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: gi|120495594|gb|EH223761.1|EH223761
EST:     CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGG                         TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
genomic: CCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaaaca ... gccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgagaaactctatgtatgattgccctgatgatcataccctggccattgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGTTCCTCTTAGGAGTTACCAATAATGTTACTAATAATGTTAAAAATGGTC
                          ccctgat  putative branch site (score: 4)
              tatgtat  TA-rich tract