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...tttattgtccatatcaatctgacatgcttattatgtttgattgattcttggacagtgttgaagttaatgtaaattttgtaattatttgtgccacatgcagGTTGACATTATTCACAAGATGGATGATTCTTATTTTGGGGAAGGTTTAACTCTCCTCAATAGCAG
species | Glycine max |
transcript | GLYMA09G24450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAG GTTGACATTATTCACAAGATGGATGATTCTTATTTTGGGGAAGGTTTAACT
genomic: TCATCTGTCCGTAAAGTTGCTCTTTGTACTGGGAAGgtacacataa ... ccacatgcagGTTGACATTATTCACAAGATGGATGATTCTTATTTTGGGGAAGGTTTAACT
tcttggacagtgttgaagttaatgtaaattttgtaattatttgtgccacatgcagGTTGACATTATTCACAAGATGGATGATTCTTATTTTGGGGAAGGTTTAACTCTCCTCAATAGCAG
agttaat putative branch site (score: 4)
ttgaagttaatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattgtccatatcaatctgacatgcttattatgtttgattgattcttggacagtgttgaagttaatgtaaattttgtaattatttgtgccacatgcagGTTGACATTATTCACAAGATGGATGATTCTTATTTTGGGGAAGGTTTAACTCTCCTCAATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - -catatca
- - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa