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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctgtccattgaagttctattcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaaacttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtagCTTTATCAAAACAAGTTGTCCACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATG

Basic information

species Glycine max
transcript GLYMA09G24430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24430.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g01410.1 (Oryza sativa), 3'ss of exon 6
gtttgtctgtccattgaagttct-attcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaaacttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtagCTTTATCAAAACAAGTTGTCCACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATG
  |  |   |||| |||  || | |||||  |    |||   | |  |  |       || | ||| ||        | |  | ||| |    |||  | | ||  |||| |     ||  |||| ||| |   || ||| |      |||  || ||   |    | |     |||  | ||| | | | || |||| | | |||| |||||| ||||||| ||||| |||||||| ||||||||||| |    |
-gtaattattccagtgattttgtgattcccattggctcatgttgttcg-acttgatttcacttctagactc-----aggcaacttgcctg-ggactaaaaactg--ttgtttgaaacttccattttgatta--tttgacatt----cttttggtgcagTCATGAAGACAGTGACTGTGAAATATCAAGATAATGAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtagCTTTATCAAAACAAGTTGTCCACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATG
                             acttaac  putative branch site (score: 3)
                                   cactgctctcttttct  CT-rich tract
             tttgaattta  TA-rich tract