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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctacatctactctttctcttataatgtttgctttatactatagaacttttctgacaattttttttggatgttattccgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTAAGATACTCAAATCAGGTCACAAATCCAGTTACCAAGACC

Basic information

species Glycine max
transcript GLYMA09G23220.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G23220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0050g01860.t01 (Vitis vinifera), 3'ss of exon 4
gtat-gctacatctactcttt----ctcttataatgtttgctttatactatagaacttttctgacaattttttttggatgttattccgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTAAGATACTCAAATCAGGTCACAAATCCAGTTACCAAGACC
|||| | |  || |||  ||     |||| | | | |     || |  | | |  |  || |  ||| |   ||| ||| | |  | |||| |||||  | ||||||||||| || ||||| ||||||||||| || || ||||||||| | ||||| |||||| | ||||||||   ||| |||    | 
gtatagtttgatttacatttctggcctctgaaactatcaagcttct--tgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctttatactatagaacttttctgacaattttttttggatgttattccgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTAAGATACTCAAATCAGGTCACAAATCCAGTTACCAAGACC
                      ttctgac  putative branch site (score: 2)
                                            ttattcc  putative PPT
     tttatactatagaa  TA-rich tract