1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgctctagttcttaaattattctagttgtcgttaaatgtctatataaataaatccagacagtagtgttaatctaagttggttttatattcttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCAGCTGGCCTGTCGATTGCA
species | Glycine max |
transcript | GLYMA09G15720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAA GGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCEST: gi|11412301|gb|BF424312.1|BF424312
genomic: AATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAgtatgaagca ... cttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATC
EST: GTTGGCATCAATCAAATCTATGACATTAGCATTGACAA GGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCEST: gi|15813644|gb|BI785919.1|BI785919
genomic: GTTGGCATCAATCAAATCTATGACATTAGCATTGACAAgtatgaagca ... cttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATC
EST: AATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAA GGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATC
genomic: AATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAgtatgaagca ... cttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATC
taaataaatccagacagtagtgttaatctaagttggttttatattcttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCAGCTGGCCTGTCGATTGCA
tgttaat putative branch site (score: 3)
ttttatattctttttt putative PPT
ttttatattctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctctagttcttaaattattctagttgtcgttaaatgtctatataaataaatccagacagtagtgttaatctaagttggttttatattcttttttcagGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCAGCTGGCCTGTCGATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt