1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctacaaggacctatgtatattaataacgacttacagctcaaagagtcattttaatactgtaacttttaagctaattacttttgattattgatgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTCGT
species | Glycine max |
transcript | GLYMA09G15550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCTTATAGACACAGCATTCATAGGCCATTTGG GGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGEST: gi|213599961|gb|DB966463.1|DB966463
genomic: CTTCTCTTATAGACACAGCATTCATAGGCCATTTGGgtacatttcc ... atgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAG
EST: TGCTGACCCAATTGCTTCTCTTATAGACACAGCATTCATAGGCCATTTGG GGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGEST: gi|208296610|gb|GE089710.1|GE089710
genomic: TGCTGACCCAATTGCTTCTCTTATAGACACAGCATTCATAGGCCATTTGGgtacatttcc ... atgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAG
EST: AGGCCATTTGG GGCCCGTGGAGCTTGCTGCTGCAGGAGTGTTCATTGCTTTGTTCAACCAAGEST: gi|208320878|gb|GE123817.1|GE123817
genomic: AGGCCATTTGGgtacatttcc ... atgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAG
EST: CTTCTCTTATAGTACACAGCATTCATAGGCCATTTGG GGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAG
genomic: CTTCTCTTATAG-ACACAGCATTCATAGGCCATTTGGgtacatttcc ... atgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAG
tcattttaatactgtaacttttaagctaattacttttgattattgatgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTCGT
tattgat putative branch site (score: 3)
taattacttttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaaggacctatgtatattaataacgacttacagctcaaagagtcattttaatactgtaacttttaagctaattacttttgattattgatgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTCGT
ctacaag
- - - - -cctatgt