Sequence
atgc intronic sequence ATGC exonic sequence...gaaatagatataagatattcttatattcttcaaggattgctcttatatgggatataatgttgttcttaatactcactcttctcatttaatattctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG
Basic information
species | Glycine max |
transcript | GLYMA09G08110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G08110.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G05940.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------------------gaaatagatataagatattcttatattcttcaaggatt-gctcttatatgggatataatgttgttcttaatactc-----actcttct-catttaatatt-ctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG
|| || || | | | | || | | || || ||||| | | | || ||| ||| || | || || | ||| || ||||||||||||| || || | ||||| || ||||| || |||||||| || |||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||
gtaagtaacaaaaaatccaacccgatttttactcttaaagtctctacagtcaaagtttttacagtcaaatttcttacagcaaaagcgtttacaaccgaaattaacagtcgttaccaatcagcccttattttccaatttata--attcctaaagttctaaagaagctcctataccaaatcttgttttcagGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGAGACGACACTCATGTGTCAACTCGAGTGATGGGCACACAAGGCTACG
upper sequence: GLYMA09G08110.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 3
gaaatagatataagatattcttatattcttcaaggattgctcttatatgggatataatgttgttcttaatactcactcttctcatt-taatatt-ctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG
|||| | | | ||| || | ||| | | || ||||| | ||| | || || | ||| | ||||||||| | | | | || ||||| |||||||| | || || ||||| || ||||| |||||||| || |||||||||||||| ||||| ||||| || || |
---------gtaagcttctgctccccccttgtttgagagtactttcagcattgttgttggctttctttgtgatcaatgaccttatggtgatactattttcagGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgggatataatgttgttcttaatactcactcttctcatttaatattctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG
tattctttc CT-rich tract
tcatttaatattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaatagatataagatattcttatattcttcaaggattgctcttatatgggatataatgttgttcttaatactcactcttctcatttaatattctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - -cttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt