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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttgatgaatcccctgaagagtatactatgctttgtgtatccattttgaggattaaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttcagTCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGCACAACAAAAGTGTATTTCTGAACCA

Basic information

species Glycine max
transcript GLYMA09G07520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtatgtttgatgaatcccctgaagagtatactatgctttgtgtatccattttgaggattaaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttc------agTCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGCACAACAAAAGTGTATTTCTGAACCA
                        |||  |  ||      |||| |  |   ||   ||||||||   |||||    |||||||         |||          |||     | |||  |  | | ||      ||| | |  ||  | || |||||||||||||| ||||| || |||| |||||| |||||||||| ||| ||||| |  
gtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtga--tgtgtatcttatttgaaa--taaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcagTTTAACCCTCCCAATCTTTCCACTTGCTGCTTTTGTGGTTGAAAAGTTGGCTCAACAAAAGTATATCTCTGAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493969|gb|EH222136.1|EH222136
EST:     TTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG                         TCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGC
genomic: TTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTGgtatgtttga ... tcgttttcagTCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttcagTCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGCACAACAAAAGTGTATTTCTGAACCA
                atttgac  putative branch site (score: 4)
                                           cttcgttttc  putative PPT
      ttaaattgtcattt  TA-rich tract