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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttctagctgaaatgtctttaggataaaatgttttcctcaaaggaagtgattggatatttttctttacatgttcctgcagATTGATGTTGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG

Basic information

species Glycine max
transcript GLYMA09G04270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04270.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 8
gtatgt-ctttctagctgaaatgtctttaggataaaatgttttcctcaaaggaagtgattggatatt---tttctttacatgttcctgcagATTGATGTTGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG
||| || | |    | |||||    ||   |  | ||  ||| |  ||    |  |    | ||| |   |         | || || |||||  ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||  | |||||| |||| ||  ||
gtaagtacctgaaggttgaaactgtttgctgtcagaacatttcctacagttaagtttcaagcatagtgaatcggaccctttttttcttcagATCAATGTTGTTACACAGCGTGGTTTTATTCCTGTTGATGAGCGAATGCGAGTCATGGATGCAGATGGCAATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgttttcctcaaaggaagtgattggatatttttctttacatgttcctgcagATTGATGTTGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG
                                            tgttcct  CT-rich tract
                             atatttttctttacat  TA-rich tract