1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgttcaaacctaaaggggaattaaaattagaatgttggaatgttttggattttttgtaattgtgtttgttgacatatgggtatttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGAAGCAACTCAACAAATTAAGGGTGAAAGCTGAGAAGGTTGCTGAAGAGA
species | Glycine max |
transcript | GLYMA09G02790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|209708662|gb|BW678839.1|BW678839
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAEST: gi|209700950|gb|BW661317.1|BW661317
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|10845453|gb|BF068572.1|BF068572
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|11688306|gb|BF595982.1|BF595982
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|11413396|gb|BF425407.1|BF425407
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|298192962|gb|HO033396.1|HO033396
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAEST: gi|58019129|gb|CX705871.1|CX705871
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|254345112|gb|GR851488.1|GR851488
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|48575427|gb|CO036398.1|CO036398
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: CTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|120493991|gb|EH222158.1|EH222158
genomic: CTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193518630|gb|FK472715.1|FK472715
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|13180779|gb|BG352119.1|BG352119
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAAGAGAAAEST: gi|20075807|gb|BQ094590.1|BQ094590
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGA-GAGAAA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|151408381|gb|EV278189.1|EV278189
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|14990945|gb|BI316618.1|BI316618
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACCAGAGAAAGEST: gi|18713999|gb|BM522755.1|BM522755
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|192328024|gb|FK021770.1|FK021770
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|209700949|gb|BW661316.1|BW661316
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAEST: gi|151396042|gb|EV265919.1|EV265919
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|254331326|gb|GR843338.1|GR843338
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193406596|gb|FK375555.1|FK375555
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: CTGAAGTTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|8825706|gb|BE209499.1|BE209499
genomic: CTGAAG-TTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|26060102|gb|CA803016.1|CA803016
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|192294449|gb|FG987378.1|FG987378
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|6846057|gb|AW348347.1|AW348347
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|4313752|gb|AI460871.1|AI460871
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGNGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTATG GAGCTGGAGAAGATGAGATAGGAGAATGCAGCGGGTG-TTTACGAGAGAAAEST: gi|7232973|gb|AW568324.1|AW568324
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGG-TGGTTTACGAGAGAAA
EST: GGGCCAAGT-GTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAATAAGAGAEST: gi|21601180|gb|BQ611511.1|BQ611511
genomic: GGGC-AGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGA
EST: GGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|16997203|gb|BM086575.1|BM086575
genomic: GGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|8827629|gb|BE211359.1|BE211359
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|19347245|gb|BM892125.1|BM892125
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193374342|gb|FK339322.1|FK339322
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: ATGGAGCTACTATGATACCATTTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAEST: gi|192307103|gb|FK002727.1|FK002727
genomic: ATGGAGCTACTATGATACCA-TTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|192331549|gb|FK023425.1|FK023425
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAG-CAGCGGTGGTTTACGAGAGAAAGEST: gi|58019326|gb|CX706068.1|CX706068
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|4303703|gb|AI443514.1|AI443514
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTCCGAGAAAAAGEST: gi|207809456|gb|GD780970.1|GD780970
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|120493138|gb|EH221305.1|EH221305
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|31306297|gb|CD391500.1|CD391500
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|42723007|gb|CK768906.1|CK768906
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193531858|gb|FK488388.1|FK488388
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: GGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAEST: gi|17024028|gb|BM095062.1|BM095062
genomic: GGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATT-AGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAANGAGAAAGEST: gi|20075731|gb|BQ094514.1|BQ094514
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAA-GAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193338371|gb|FK305174.1|FK305174
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGGTACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|208170151|gb|GD968336.1|GD968336
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: GGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|7924979|gb|AW831005.1|AW831005
genomic: GGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TTGGCAGGTTGGCATCTGATGTTGGATAGAGCTACTATGATACCTTTAGG GTGCTGGATAAGAAGAEST: gi|207840476|gb|GD812629.1|GD812629
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGA
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|58018845|gb|CX705587.1|CX705587
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|193483526|gb|FK450165.1|FK450165
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: AAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGTAGAAGGCAGCGGTGGTTTACGAGAGAAAGEST: gi|20498735|gb|BQ273665.1|BQ273665
genomic: AAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAAGAGAAGGCAGCGGTGGTTTACGAGAAAAAGEST: gi|5606895|gb|AI900993.1|AI900993
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGA
genomic: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagtgttt ... ttgctcacagGAGCTGGAGAAGAAGAGA
tttggattttttgtaattgtgtttgttgacatatgggtatttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGAAGCAACTCAACAAATTAAGGGTGAAAGCTGAGAAGGTTGCTGAAGAGA
tgttgac putative branch site (score: 3)
tttttatt putative PPT
attttttgtaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgttcaaacctaaaggggaattaaaattagaatgttggaatgttttggattttttgtaattgtgtttgttgacatatgggtatttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGCGGTGGTTTACGAGAGAAAGAAGCAACTCAACAAATTAAGGGTGAAAGCTGAGAAGGTTGCTGAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - -tcaaacc
- - - - - - - - - - - - - - - - - - - ggaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac