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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttactggcaaatgtacctgttctctttctttgttgtatgtacattagaactcactattgccttgctttctttttcttttttaaatataactctcagGATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT

Basic information

species Glycine max
transcript GLYMA09G02490.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 2
atttttactggcaaatgtacctgttctctttctttgttgtatgtacattagaactcactattgccttgctttctttttcttttttaaatataactct--------cagGATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT
        ||   ||  ||  |   |  ||    || ||  | | |||| ||  ||   ||| |  |  | |||  | |||  |     | ||   |        |||||||| ||||| ||||||||||| |||||  | |||||||||||||||||||| ||||| |||||||||||
-------atgtgtaacttatttac-cggttgaaatggtgagttttcatttgagttcttaatttctgttttgtctcatgcttcctgtggcaaaatcttgtctattccagGATGATACTGCATTTGAGAAACAAAGTGCCTTGTTTGCTTTGGCAATATCAGACATTGTGCTGATAAACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023193|gb|BM094227.1|BM094227
EST:     GCACAATTGCTATGGATTTAGAGGGCACTGATGGAAGGGAGAGGGGCGAG                         GATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA
genomic: GCACAATTGCTATGGATTTAGAGGGCACTGATGGAAGGGAGAGGGGCGAGgtaatcaatt ... taactctcagGATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA
EST: gi|209698106|gb|BW661049.1|BW661049
EST:     GCACAATTGCTATGGATTTAGAGGGCACTGATGGAAGGGAGAGGGGCGAG                         GATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA
genomic: GCACAATTGCTATGGATTTAGAGGGCACTGATGGAAGGGAGAGGGGCGAGgtaatcaatt ... taactctcagGATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagaactcactattgccttgctttctttttcttttttaaatataactctcagGATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT
                                                ctctc  CT-rich tract
                    ttgctttctttttctt  TA-rich tract