Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatgttttgcttggagtttggatgcatttgattagtgattttaaaaatatcgtttcaccctatactttttctacttctcttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA

Basic information

species Glycine max
transcript GLYMA09G02070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02070.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatatgttttgcttggagtttggatgcatttgattagtgattttaaaa----atatcgtttcac-cctatactttttctacttctcttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA
      || |||| | | |  | | |  | ||   | | ||  || ||| |    |||   | |||| | | | ||||||||  ||  |||||    |||| ||||| |  ||| | ||||| ||    |||||||| ||||||| |||||| ||||||||||| || || || ||||||||||||
---gtaatattttccctaggttctagtggtataacact-gtacttataatagtacatactttctcacacttgtcctttttcttatttacttgtt---agGAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208249043|gb|GE043658.1|GE043658
EST:     GTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAAG                         GAATGCAAAGC
genomic: GTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAA-Ggtaaatatgt ... ttgtctacagGAATGCAAAGC
EST: gi|207708576|gb|GD691910.1|GD691910
EST:     AGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGC
genomic: AGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattttaaaaatatcgtttcaccctatactttttctacttctcttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA
                  tttcaccctatacttt  CT-rich tract
     tttaaaaatatcgttt  TA-rich tract