1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acttcgtaaatttgaaaaaagtttccagaacttcagtaattccaactaagcttttacgtataaccttggcttcaactgacttttgtggaaggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCCAACTCCTGATACAAATGA
species | Glycine max |
transcript | GLYMA09G02030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCEST: gi|192325737|gb|FK015094.1|FK015094
genomic: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGTGCTGGTAACACTTCTCCAAAGTTGCEST: gi|192323973|gb|FK015694.1|FK015694
genomic: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGTGCTGGTAACACTTCTCCAAAGTTGCEST: gi|7147320|gb|AW509242.1|AW509242
genomic: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
EST: CAGGCTCGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCATAGATG GTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCEST: gi|193471904|gb|FK437775.1|FK437775
genomic: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
genomic: CAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGCGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGC
ctaagcttttacgtataaccttggcttcaactgacttttgtggaaggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCCAACTCCTGATACAAATGA
aactgac putative branch site (score: 2)
aatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcgtaaatttgaaaaaagtttccagaacttcagtaattccaactaagcttttacgtataaccttggcttcaactgacttttgtggaaggaatatcagGTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCCAACTCCTGATACAAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - -ccaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg