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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactaattgtcaatccctatttcatttttcttttccttcacaccaacaaagtgtgatgtcagttgagttggcttctttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattagGAATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCTGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGATATATCAGTTGGATATG

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 4
gtaatactaattgtcaatccctatttcatttttcttttccttcacaccaacaaagtgtgatgtcagttgagttggcttctttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattagGAATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCTGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGATATATCAGTTGGATATG
                                                    |   ||  |  |  |||| || | ||  ||  |   |   ||  |    |  |   |  || | ||      || | || ||||||||||||| ||||||||||| ||  | || |||||| |||  || || |||||||||||| ||||||||||||||||||| || ||||||||| |||
-------------------------------------------gtgattttgagcagtttttcctcttgaatttgattgattattttgactatggctgccta--tgctaaaaactgtg----ggtccttatcagGAATTTATTGAGGCAACTAGAGAGCCCAGTGTCACATTTTTGGTGGCCAAATTTGATGGTATATTAGGACTTGGATTTCAAGAGATTTCAGTTGGAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattagGAATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCTGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGATATATCAGTTGGATATG
                                             tcttcatt  CT-rich tract
     taatatgttgattaat  TA-rich tract