Sequence
atgc intronic sequence ATGC exonic sequence...tgatataatgagtgcaatttcataaattcagttagcctttttgtgtaattagcttagggagtactgtgcatgataagacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTG
Basic information
species | Glycine max |
transcript | GLYMA09G00710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G00710.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G876898_T01 (Zea mays), 3'ss of exon 2
tgatataatgagtgcaatttcataaattcagttagcctttttgt-gtaattagcttagggagtactgtgcatgataagacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTG
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------------------------gtatcacttcgattctttatcgccatta-tttgagcagtattgtaaggattgtcttatttctta-------tttcagCTACACCGGCGAAGATGGTTTTGAGATCTCTGTTCCGTCAGAGAATGCAGTGGATCTTGCAGAGGCCATCCTAGAGAGATCGGAAGGCAAGGTGCGGCTG
upper sequence: GLYMA09G00710.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0116g01540.t01 (Vitis vinifera), 3'ss of exon 2
tgatataatgagtgcaatttcataaattcagtta-gcctttttgtgtaattagcttagggagtactgtgcatgataagacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTG
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taatgatttagtcacaatccaaattgcaatatgatgactgtctgaatcaacaaaccccacaacaagacacttgatatt-ttctttacacgaaaattttcagGTACACAGGTGAAGATGGATTTGAAATTTCAGTTCCTTCCGAGAATGCAGTAGATCTTGCCAAAGCAATCTTGGAGAAATCTGAAGGGAAGGTAAGGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151407431|gb|EV277246.1|EV277246EST: TTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGG GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGC
genomic: TTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattagcttagggagtactgtgcatgataagacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTG
ctttc CT-rich tract
atgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatataatgagtgcaatttcataaattcagttagcctttttgtgtaattagcttagggagtactgtgcatgataagacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA