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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattgtactcaatttagatattctgtttattttattttatttttcttgaagcattcttgtttaaatatatatggcaattttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAA

Basic information

species Glycine max
transcript GLYMA09G00630.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594272|gb|DB973597.1|DB973597
EST:     GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCT                         GTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAA
genomic: GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCTgtaagattgt ... ttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAA
EST: gi|151407141|gb|EV276956.1|EV276956
EST:     GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCT                         GTGATTGTGGAGAAAGC
genomic: GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCTgtaagattgt ... ttgtgtgcagGTGATTGTGGAGAAAGC
EST: gi|208259720|gb|GE059750.1|GE059750
EST:     AGAAATATCCTGATAGAATACCT                         GTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAA
genomic: AGAAATATCCTGATAGAATACCTgtaagattgt ... ttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAA
EST: gi|33389770|gb|CA852977.1|CA852977
EST:     GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCT                         GTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAA
genomic: GGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCTgtaagattgt ... ttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttttcttgaagcattcttgtttaaatatatatggcaattttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAA
                         tttaaatatatatggc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagattgtactcaatttagatattctgtttattttattttatttttcttgaagcattcttgtttaaatatatatggcaattttgtgtgcagGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA