1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtactaaagttctattgctattgctgtttcttgtttgaacattttgatatctgttctgtagatttctacatctgcacagatttttgaactatcacattcactcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTTCTGGGGCAACAGCAGCGCTGAAGCTGGTAGGAGAGGCTTTTCCATGGA
species | Glycine max |
transcript | GLYMA09G00460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAG GTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTEST: gi|213617030|gb|DB961510.1|DB961510
genomic: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAGgtactaaagt ... actcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACT
EST: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAG GTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTEST: gi|213607757|gb|DB959096.1|DB959096
genomic: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAGgtactaaagt ... actcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACT
EST: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAG GTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTEST: gi|209697830|gb|BW670086.1|BW670086
genomic: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAGgtactaaagt ... actcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACT
EST: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAG GTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACT
genomic: GTGACTCCAGTTCTGCAACTCTTGACATTGTCAAGAACGCCCGCCAGCAGgtactaaagt ... actcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACT
tctgtagatttctacatctgcacagatttttgaactatcacattcactcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTTCTGGGGCAACAGCAGCGCTGAAGCTGGTAGGAGAGGCTTTTCCATGGA
ttcactc CT-rich tract
atttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaaagttctattgctattgctgtttcttgtttgaacattttgatatctgttctgtagatttctacatctgcacagatttttgaactatcacattcactcatgcagGTCCTTGACTACTGCAATGCATCTCCCAAAGAATACAAATGTATATTTACTTCTGGGGCAACAGCAGCGCTGAAGCTGGTAGGAGAGGCTTTTCCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA