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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG

Basic information

species Glycine max
transcript GLYMA08G47790.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47790.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 2
gtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
                                                          |   ||| | | |   ||||    ||||| |   || || |  |||||    | |   ||   | ||||    | | | | |   | ||    ||| | ||| || ||||||||||| ||||| || || ||||| || |||||||||||||| ||||||||
----------------------------------------------------------ttttgaactgata--tgattgtattttcacatgtttctttt--gttat----tttcatttattagttgcaatctcttgcaat--gagctat--tctatttatatggttgcagATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692732|gb|BM521580.1|BM521580
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254326716|gb|GR832868.1|GR832868
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|254322565|gb|GR837979.1|GR837979
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|8283342|gb|BE020903.1|BE020903
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|19271012|gb|BM887268.1|BM887268
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|17022331|gb|BM093365.1|BM093365
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
EST: gi|9259167|gb|BE347314.1|BE347314
EST:     TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCG                         ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
genomic: TTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataattt ... gtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcagATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG
                       ttctaaa  putative branch site (score: 2)
               ttatagtattctaaa  TA-rich tract