1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgaaatctaatagcatcaagcgaggctctgttgttattgttgttgggttttccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGAAGCAGCTTGCCAAATTGAGGGAGAAAGCTGAGAAGGTTGCAGAGAAGA
species | Glycine max |
transcript | GLYMA08G46860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|208136824|gb|GD935416.1|GD935416
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|208122761|gb|GD923635.1|GD923635
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|208204614|gb|GE007853.1|GE007853
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|298195955|gb|HO044346.1|HO044346
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCEST: gi|193339582|gb|FK304859.1|FK304859
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGC
EST: GGCCAATTGTCATCTGGGGGTTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|298189729|gb|HO038132.1|HO038132
genomic: GGCCAATTGTCATCT-GAGG-TTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAEST: gi|298189786|gb|HO038189.1|HO038189
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGA
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTEST: gi|192325948|gb|FK016625.1|FK016625
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGT
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|18717939|gb|BM523010.1|BM523010
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|193632583|gb|FK580515.1|FK580515
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|14011338|gb|BG726260.1|BG726260
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAEST: gi|7042145|gb|AW472039.1|AW472039
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGA
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACA-TTGTGTTACGAGAGGAAGEST: gi|15286024|gb|BI469915.1|BI469915
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|105633518|gb|DW246881.1|DW246881
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|163920729|gb|EH039986.1|EH039986
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|151407543|gb|EV277358.1|EV277358
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|193377070|gb|FK342707.1|FK342707
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTAC
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTAC
ggttttccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGAAGCAGCTTGCCAAATTGAGGGAGAAAGCTGAGAAGGTTGCAGAGAAGA
ttctaat putative branch site (score: 2)
aatttctaatttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatctaatagcatcaagcgaggctctgttgttattgttgttgggttttccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGAAGCAGCTTGCCAAATTGAGGGAGAAAGCTGAGAAGGTTGCAGAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg