1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtgcttgctttctggaatttgtttactcctttgaatttcattttttttcttagtgaattgttaagagagatgtcacagtgaatttgtttactcctttgttattgttgttggatttcccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGAAGCAACTTGCCAAATTGAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGA
species | Glycine max |
transcript | GLYMA08G46850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|209719538|gb|BW669175.1|BW669175
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193553669|gb|FK506260.1|FK506260
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193363286|gb|FK325774.1|FK325774
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAAGGAAEST: gi|209719537|gb|BW669174.1|BW669174
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGA-GGAA
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAEST: gi|298173139|gb|HO020123.1|HO020123
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGA
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGEST: gi|58024885|gb|CX711626.1|CX711626
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|151394249|gb|EV264120.1|EV264120
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193701139|gb|FK638652.1|FK638652
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|213615010|gb|DB957048.1|DB957048
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|7041647|gb|AW471599.1|AW471599
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTCGAGAAGAAAATGAATGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193483976|gb|FK449383.1|FK449383
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|15813016|gb|BI785291.1|BI785291
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193728150|gb|FK667650.1|FK667650
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|208338640|gb|GE136064.1|GE136064
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|208205382|gb|GE008313.1|GE008313
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAGAGGAAGGATAGAGCACAATTGTGTTACGAGAGGAAGEST: gi|5057451|gb|AI735927.1|AI735927
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|41146366|gb|CK606577.1|CK606577
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|193725749|gb|FK660127.1|FK660127
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|13790079|gb|BG652670.1|BG652670
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGEST: gi|7042684|gb|AW472578.1|AW472578
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAAEST: gi|193547600|gb|FK501537.1|FK501537
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: GAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|208304697|gb|GE103546.1|GE103546
genomic: GAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|9899592|gb|BE608560.1|BE608560
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TTGGCCAATTGTCATCTGAGGTTGGATGGATCTACTATGATACCATCAGG GAACTCGAGAAGATAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGATGEST: gi|208193804|gb|GD990727.1|GD990727
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGEST: gi|192311953|gb|FK004556.1|FK004556
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
EST: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGG GAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
genomic: TGGGCCAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGgtgagtgctt ... ttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAG
gatttcccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGAAGCAACTTGCCAAATTGAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGA
ttctaat putative branch site (score: 2)
aatttctaatttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcttgctttctggaatttgtttactcctttgaatttcattttttttcttagtgaattgttaagagagatgtcacagtgaatttgtttactcctttgttattgttgttggatttcccctcttttgtttgcaatttctaatttctaattgctatgttgctaacagGAACTTGAGAAGAAAAGGAAGGAGAGAGCACAATTGTGTTATGAGAGGAAGAAGCAACTTGCCAAATTGAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA