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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcttataagcttgttcaactcatttgaagtttttgtttgtttgaagtccgtgaatcataaaattcatgtttataatactattgtctggctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAGTATGATTCTCTCTTATTGTGTTTTA

Basic information

species Glycine max
transcript GLYMA08G46570.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46570.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g28340.1 (Oryza sativa), 3'ss of exon 3
attcttataa-gcttgttcaactcatttgaagtttttgtttgtttgaagtcc--gtgaatcataaaattcatgtttataatactattgtctggctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAGTATGATTCTCTCTTATTGTGTTTTA
  | ||||   |  | ||||  |  ||  |  || |||| | ||   | | |  ||   | ||| ||| |    |   || ||  ||   ||     ||||||||||||| | |  || || || || ||||||||||| || ||||| ||||||||||| || || ||||||||||                          
gatgttatgttggatcttcattttgttc-agtttcttgtattttgccatttctagtttctgatataatgctatctctcaacacattttggtgat--gatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGAGCCCCATTTCGTTCATTGGATAA--------------------------

upper sequence: GLYMA08G46570.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G031802_T01 (Zea mays), 3'ss of exon 1
-attcttataagctt-gttcaactcatttgaagtttttgtttgtttgaagtccgtgaatcataaaattcatgtttataatactattgtctggct-caatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAGTATGATTCTCTCTTATTGTGTTTTA
 ||  |  || | |  ||   |  | |||| |       ||  ||||   ||  |   | ||| |    ||   || |      |    ||| | | ||||||||| ||| | |  || || || || |||||||| || || ||||| ||||||||||| |||||||| |||||||                          
tatcatgctaggatcagtcttatccttttggacagagccttaatttg---tctctagtttatatacgctattactaaagctgattcacttggttacgatgcagTGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA--------------------------

upper sequence: GLYMA08G46570.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------------------------------------attcttataagcttgttcaactcatttgaagtttttgtttgtttgaagtccgtgaatcataaaattcatgtttataatactattgtctggctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAGTATGATTCTCTCTTATTGTGTTTTA
                                                                 || | |    |  |||||  ||      |   | |  |||  ||    || | |  |||||   |  ||   ||||  | || || ||  ||   ||||| |  ||| | ||| ||||||| |||||||||||||| || ||||| |||||||| |||||||| || |||||||                          
gtacgatcttctttccataacttccctttacttgaaatttatcgttgcgtcgttctcttgactggatacatcattgactgttct-cttgccaaactctataatttagtttccctctgagtttcatact-tcgattgctataccaataatg-ctctcttcttgcagGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAA--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31460895|gb|CD402923.1|CD402923
EST:     TGGACAGTATGTCTTTCTCCTCGG                         TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTA
genomic: TGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTA
EST: gi|31561500|gb|CD487338.1|CD487338
EST:     AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGG                         TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTT
genomic: AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTT
EST: gi|10232336|gb|BE801224.1|BE801224
EST:     AGAACTACAAATATTGACAATTTGACTGGACAGTATGTCTTTCTTCTCGG                         TGCGTACAGAGGACTATACATTCTTCAA-TGCATCTATCGCTACTTTACTG
genomic: AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCT-CAACTGGATCTATCGCTACTTTACTG
EST: gi|209715072|gb|BW677115.1|BW677115
EST:     AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGG                         TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGA
genomic: AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGA
EST: gi|11412647|gb|BF424658.1|BF424658
EST:     AGAACTAGAAATATTGACAATGTGACTGGACAGTATGTCTTTCTTCTCGG                         TGCATACAGAGGACTATACATTCTCAACTGGATCTAT
genomic: AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTAT
EST: gi|151401246|gb|EV271060.1|EV271060
EST:     AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGG                         TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGA
genomic: AGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatatt ... ctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtccgtgaatcataaaattcatgtttataatactattgtctggctcaatgcagTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAGTATGATTCTCTCTTATTGTGTTTTA
         aatcataaaattcatg  TA-rich tract