Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggctatcacttttgatgtcttttgtttgctatagaagtgtttgattcttattatttatctttactgaatttctgcattttcctttcttgcttgtgcagATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG

Basic information

species Glycine max
transcript GLYMA08G46170.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305231|gb|FG993969.1|FG993969
EST:     TCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGG                         ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGGG
genomic: TCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGgtattacact ... gcttgtgcagATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttattatttatctttactgaatttctgcattttcctttcttgcttgtgcagATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG
 gtttgat  putative branch site (score: 5)
                         tttctgcattttcctt  putative PPT
     tattatttatctttac  TA-rich tract