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gtatatatatgtcacatttaattctgtttttgtgacgtttgtgttgattatccaagtcttaactatttgttgtacttgttgttgctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACAGTCAGAGAGG
species | Glycine max |
transcript | GLYMA08G46090.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGEST: gi|193457448|gb|FK421968.1|FK421968
genomic: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
EST: GAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGEST: gi|16996514|gb|BM085886.1|BM085886
genomic: GAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
EST: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAEST: gi|208259605|gb|GE058445.1|GE058445
genomic: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTA
EST: GGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGEST: gi|208259962|gb|GE060244.1|GE060244
genomic: GGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
EST: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGEST: gi|193387338|gb|FK352153.1|FK352153
genomic: TACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
EST: CTGAGGGGGACGAAATGGGAGGAACCCTAAGGATCCTGATGAAGTATTGG TTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
genomic: CTGAGGGGGAC-AAATGGGA-GAACCCTAAGGATCCTGATGAAGTATTGGgtatatatat ... gctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATG
ttgtgttgattatccaagtcttaactatttgttgtacttgttgttgctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACAGTCAGAGAGG
tgctaat putative branch site (score: 2)
ttaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatatgtcacatttaattctgtttttgtgacgtttgtgttgattatccaagtcttaactatttgttgtacttgttgttgctaatgcagTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACAGTCAGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG