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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatatcactgattctggtgtagtgtgtttgcacattgtttacttttaccctgaaatcatgttatctctgtgtaatatacaagtggtcaggttctaacttcgaacattttcatgcagGCTTTAAATATATTTGAGTCCAGTCTACGACGTGGAAAATTTGACGAGTCACGCAA

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283272|gb|BE020833.1|BE020833
EST:     AATCTCTTGCAGCAGCAGGAGCTGAAATTCTTGTCGGCACATGGGTACCT                         GCTTTAAATATATTTGAGTCCAGTCTACGACGTGGAAAATTTGACGAGTCA
genomic: AATCTCTTGCAGCAGCAGGAGCTGAAATTCTTGTCGGCACATGGGTACCTgtaagtaaat ... tttcatgcagGCTTTAAATATATTTGAGTCCAGTCTACGACGTGGAAAATTTGACGAGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctctgtgtaatatacaagtggtcaggttctaacttcgaacattttcatgcagGCTTTAAATATATTTGAGTCCAGTCTACGACGTGGAAAATTTGACGAGTCACGCAA
                             ttctaac  putative branch site (score: 1)
                                          cattttc  putative PPT
          taatatacaa  TA-rich tract