Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

Basic information

species Glycine max
transcript GLYMA08G45770.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
|||   || | ||       |||   |||| ||||   |||| ||| |       || |  | |  | || || |   |  |||  ||  |  |||||||| ||||||||||||||||| || |  || ||||||||||| || || || || ||||||||||||||||| ||| |||| |||||  | ||| | |
gtaatatcgtgag------gcctctgatgtttcct---aattactgtta----cctagtcttaagatgttaacatatctctctcctttttct-cagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
|||   ||||| ||   |  |   |  ||  || ||     |  |||| | || || |   ||   |    |  ||  |   | |||     ||||||||| ||||||||||| ||||| || |  ||||| |||||||| ||||| || || ||||||||||| ||||| ||| |||| |||||  | ||| | |
gtaatttctttggcaatttgctcca--tgattcttcaactgtcttgct-atttaatga--gttggatgactaagtttgtctgtttgt-----acagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
|||   | | |   | || |  |    ||   | |      |  |||||| || ||| |   ||  |||     |  |||  | | ||     ||||| |||||||| ||||||||||| || |  || || |||||||||||||| || ||||||||||| ||||| |||||| ||||||||||  | ||| |||
gtaaattttctgctttcttatttct--tgatccatgccccctattgctgatttcatact---taattataggtgtg-atgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
   |   |||| |  | | || |||  | |     |   | |  |||||| || ||| | |  || ||       | |||  ||| |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
--gtaaactttgg--gatgac-ttatttcttgatccatgactcttgctgatttcatacttaa-atataggtgtgat-atgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-------gt-atgctctttagctgctaaccttaaatgtc-----tcctctga------atttctgctgaatttataat-gattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
       || |||||||      | ||| |||    ||      |    |||      | |  |||||| || ||| |  |  || ||       | |||  ||| |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgat-atgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
-------gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataat-gattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
          |   |||| |  | | || |||  | |     |   | |  |||||| || ||| |  |  || ||       | |||  ||| |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
ctgggtgaggtaaactttgg--ggtgac-ttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgat-atgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
--gtatgctctttagctgctaaccttaaatgtctcct----ctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
  ||    | |  |     |    | |  | | || |    |   | |  ||||||  | ||| | |  || ||       | |||   || |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaa-atataggtgtgat-atgttcctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataat-gattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
   |   |||| |  | | || |||  | |     |   | |  |||||| || ||| |  |  || ||       | |||  ||| |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
--gtaaactttgg--ggtgac-ttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgat-atgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctc--ctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
||| ||  ||   |   |    |  |||| |     |||    |    ||  |||||||   |  || ||||    ||  |   | |||     |||||||||||| |||||||| |||||||| |  ||||| |||||||| ||||| || |||||||||||||||||| | ||||||||||||||||| || ||||
gtaagcattt--accattgttatgcaatgccaaaattctactatcagactagatttatat--aacatttatttttgtttgtttgtttgtg--tgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcacct-tcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
||||| | ||  | | |||  |||         ||  | ||  ||      ||  ||   || || |||| |  | || | |   ||||    |||||| || ||||| ||||| |||||||| |  ||||| |||||||| ||||| |||||||||||||||||||| ||||| || || || ||   |||| |||
gtatgatttt--gttactattctt---------cttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
||||||  |||  |||||   ||   |  | |       || | || |  || ||   | || ||  |       ||||    ||| | |  |||||| || ||||||||||| ||||| || |  || ||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||
gtatgcctttt--ctgctcttctcccacttatttatctcatat-tgtttgatctac--taatcatacaaaacatgtcat----ctgcttc--acagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306899|gb|FK002621.1|FK002621
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|208080862|gb|GD873774.1|GD873774
EST:     GATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: GATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|207706975|gb|GD689035.1|GD689035
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTT
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTT
EST: gi|26058968|gb|CA801882.1|CA801882
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|254318039|gb|GR832207.1|GR832207
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|298165755|gb|HO008726.1|HO008726
EST:     TTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGCTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|5753653|gb|AI960940.1|AI960940
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|193517839|gb|FK473058.1|FK473058
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACC
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACC
EST: gi|4436991|gb|AI522856.1|AI522856
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|151413141|gb|EV282949.1|EV282949
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|209703578|gb|BW678280.1|BW678280
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|193398689|gb|FK361699.1|FK361699
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTT
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTT
EST: gi|192332922|gb|FK025019.1|FK025019
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGGCAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|192333814|gb|FK025075.1|FK025075
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|192319434|gb|FK005874.1|FK005874
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|16106410|gb|BI894150.1|BI894150
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|151396097|gb|EV265974.1|EV265974
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|5605874|gb|AI899972.1|AI899972
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGGGAG                         GAATTTAAGGCCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|213594190|gb|DB963787.1|DB963787
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|213597920|gb|DB958301.1|DB958301
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|192319433|gb|FK005873.1|FK005873
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|298171428|gb|HO016460.1|HO016460
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|298180050|gb|HO025265.1|HO025265
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|213603401|gb|DB970470.1|DB970470
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|192327797|gb|FK022398.1|FK022398
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|208301771|gb|GE099001.1|GE099001
EST:     ACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: ACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|151412215|gb|EV282027.1|EV282027
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|193458142|gb|FK422482.1|FK422482
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|213607341|gb|DB957149.1|DB957149
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|151413002|gb|EV282810.1|EV282810
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|209714918|gb|BW682083.1|BW682083
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|208242762|gb|GE038834.1|GE038834
EST:     GGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: GGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|298195035|gb|HO043563.1|HO043563
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|192332466|gb|FK024227.1|FK024227
EST:     TTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
EST: gi|298172900|gb|HO019884.1|HO019884
EST:     TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG                         GAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA
genomic: TTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGgtatgctctt ... ttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC
                                        ctctgtt  CT-rich tract
      tgaatttataatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC