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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcagcaatttcaaattgatttgtctcttgactgtttcaatctagacctgtgagatcttttttctgaacatatgatcattatccctctaaacagGCTCTATCAAAAATTACATCGACTGGGGCAATGACATTTTGCTTCATCCAAGCCATAGAGCGTGGCCATGGGGCTACCTATGGCAGCATTCTTACTGCAA

Basic information

species Glycine max
transcript GLYMA08G45470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45470.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G035928_T01 (Zea mays), 3'ss of exon 3
gtaagtttcagcaatttcaaattgatttgtctcttgactgtttcaatctagacctgtgagatcttttttctgaacatatgatc--att---atccctctaaacagGCTCTATCAAAAATTACATCGACTGGGGCAATGACATTTTGCTTCATCCAAGCCATAGAGCGTGGCCATGGGGCTACCTATGGCAGCATTCTTACTGCAA
   ||||||     |||   |||  || |  ||  |  |||||   |||    |       | |  ||  | | ||| ||||   | |   ||   ||| | |||||| ||||||| || || |||||||| ||||||||||| |||||||||||||| || || ||||| || ||  | ||||| || || || || |   | |
-gcagtttc--ttgtttactatttgttcga-tcaagtttgttttggtctgcttcaacccactgtcgttcat-agcatttgattcaactggaattgttctgatcagGCTTTATCAAAGATCACTTCGACTGGTGCAATGACATTCTGCTTCATCCAAGCTATTGAACGTGGACAGGGCACCACCTACGGTAGTATCCTGAACTCTA

upper sequence: GLYMA08G45470.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G155422_T01 (Zea mays), 3'ss of exon 3
-gtaagtttcagcaatttcaaattgatttgtctcttgactgtttcaatctagacctgtgagatcttttttctgaacatatgatcattatccctctaaacagGCTCTATCAAAAATTACATCGACTGGGGCAATGACATTTTGCTTCATCCAAGCCATAGAGCGTGGCCATGGGGCTACCTATGGCAGCATTCTTACTGCAA
 || | | |      | |   ||  | ||   | |   ||| |||||  |  | |     |   ||  | |     ||   ||   |||   ||| | |||||| |||||||  | || |||||||| |||||||||||| ||||||||||||| || || ||||| || ||  | ||||| || || || || |   | |
tgttattgttgtatttgtttgatcaagtttgttttgctctgcttcaacttcaatccact-gtcattcatacatttgattcaattggtattgttctgatcagGCTTTATCAAAGGTCACTTCGACTGGTGCAATGACATTTGGCTTCATCCAAGCTATTGAACGTGGACAGGGCACCACCTACGGTAGTATCCTGAACTCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctagacctgtgagatcttttttctgaacatatgatcattatccctctaaacagGCTCTATCAAAAATTACATCGACTGGGGCAATGACATTTTGCTTCATCCAAGCCATAGAGCGTGGCCATGGGGCTACCTATGGCAGCATTCTTACTGCAA
                                       ttatccctct  CT-rich tract
               atctttttt  TA-rich tract