1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...agcattttcgaaaagtctgcatttcttcatatgtatgattggttttaatatctagtgtctaaaactcatttgctgaaccattacacatgcaactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTTAATTTGCCTTCTTGGGGGTATGGTT
species | Glycine max |
transcript | GLYMA08G45210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAG GAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCEST: gi|213599133|gb|DB958380.1|DB958380
genomic: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGgtaataaaaa ... aactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
EST: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAG GAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCEST: gi|213617054|gb|DB961534.1|DB961534
genomic: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGgtaataaaaa ... aactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
EST: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAG GAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCEST: gi|213596697|gb|DB958017.1|DB958017
genomic: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGgtaataaaaa ... aactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
EST: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAG GAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCEST: gi|213601502|gb|DB956752.1|DB956752
genomic: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGgtaataaaaa ... aactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
EST: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAG GAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
genomic: CTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGgtaataaaaa ... aactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGC
taatatctagtgtctaaaactcatttgctgaaccattacacatgcaactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTTAATTTGCCTTCTTGGGGGTATGGTT
gtctaaa putative branch site (score: 3)
tctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattttcgaaaagtctgcatttcttcatatgtatgattggttttaatatctagtgtctaaaactcatttgctgaaccattacacatgcaactttgcagGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTTAATTTGCCTTCTTGGGGGTATGGTT
- - - - - - - - - gcatttc
- - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc