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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtatctaggttatgcttatttttatgacattgtggtttattgtgttgtttaaattcttcttttttgtgcactttcagAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAAGTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTTGCTAACTT

Basic information

species Glycine max
transcript GLYMA08G43590.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33388029|gb|CA851236.1|CA851236
EST:     CAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCA                         AAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAA
genomic: CAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAgtaggtatct ... gcactttcagAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAA
EST: gi|9258697|gb|BE346844.1|BE346844
EST:     AATATGAANTAAGT-GCTATCTAAGCACATTATCCCCCTTGAACCAACCA                         AAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCA
genomic: AAGATGAA-TAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAgtaggtatct ... gcactttcagAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgacattgtggtttattgtgttgtttaaattcttcttttttgtgcactttcagAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAAGTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTTGCTAACTT
                               ttcttcttttttgtgc  CT-rich tract
                      ttgtttaaattcttct  TA-rich tract