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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttccgttccccattttccagtgtttctttgggtttggtgtttaactgtttgtggtgatgagcaagagggtgaatgtttttgggtgctattttgttttctgacttgggactattgtgggggtgtgggtgatggcagGAAGGACACTTATGGTGTGTTTGCGGACCCTGTTGATCCAGAAGAG

Basic information

species Glycine max
transcript GLYMA08G43050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43050.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G336962_T01 (Zea mays), 3'ss of exon 3
gtaagtgtttccgttccccattttccagtgtttctttgggtttggtgtttaactgtttgtggtgatgagcaagagggtgaatgtttttgggtgctattttgttttctgacttgggactattgtgggggtgtgggtgatggcagGAAGGACACTTATGGTGTGTTTGCGGACCCTGTTGATCCAGAAGAG
                                     | |  || |    |  | ||||| | ||   |||||| |||   ||||       | | |  ||    |    |     || |||     ||     |    |||||||||| || ||||| ||||||||||| ||||| |||||||| |||
-------------------------------------gtgcgtgtttcacacatctttgtcg-gaaacgcaagatggtatttgttgcatcaagttttaatgagcgcgatttcttcccttttgccactgttctatt--ccgcagGAAGGATACATATGGAGTGTTTGCGGAGCCTGTGGATCCAGAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgctattttgttttctgacttgggactattgtgggggtgtgggtgatggcagGAAGGACACTTATGGTGTGTTTGCGGACCCTGTTGATCCAGAAGAG
               ttctgac  putative branch site (score: 2)
      tattttgtttt  TA-rich tract