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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttttgtggcattattcagtgtttgactgattagcattgatgttgcgtttgtttcattcatctttcttctgcttgtcttagGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTT

Basic information

species Glycine max
transcript GLYMA08G42230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0142g00100.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------gtttgttttttgtg--gcattattcagtgtttgactgattagcattgatgttgc--gtttgtt---------tcattcatctttcttctgcttg---tcttagGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTT
                            ||    |    |    |||  |  ||||| ||   | |||    ||| || ||    |    |         |||| ||| ||| |||    ||   |   |||||||||| || || || || ||||| ||||| || ||||| ||||| ||||| ||| |||| ||||| ||||||||||||||||||||||| || ||||
gtttgaactaagggctgaactgcattgagtaaagtccacgcattgcaggacgcagtgcttttttaatttagtttggtgctgttgatccactaacatctagtcatgcatttttgttccttatgatattccagGATAACCCATCAGAGAAGGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgattagcattgatgttgcgtttgtttcattcatctttcttctgcttgtcttagGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTT
        cattgat  putative branch site (score: 4)
                         tttcattcatctttct  putative PPT
                     tttgttt  TA-rich tract