1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgagcttacatgattttcatacacagtttgtaattaagaaggttcacattggtgcttccatatgttgttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCAACCAAGTTTGCTGCACTACCGTGGAGATTTGGCCGTCAAAGTGTTCTC
species | Glycine max |
transcript | GLYMA08G41630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGEST: gi|209701051|gb|BW652163.1|BW652163
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGG
EST: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCEST: gi|22524681|gb|BU083492.1|BU083492
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
EST: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCEST: gi|9259707|gb|BE347854.1|BE347854
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
EST: CTTGCTTTAGGAGCCGTACATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCEST: gi|120530488|gb|EH258621.1|EH258621
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
EST: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCEST: gi|209706849|gb|BW661485.1|BW661485
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
EST: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAG ATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
genomic: CTTGCTTTAGGAGCCGTAAATTCTGAGGTTCTTCTTGGAAGgtatgagctt ... ttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGC
acagtttgtaattaagaaggttcacattggtgcttccatatgttgttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCAACCAAGTTTGCTGCACTACCGTGGAGATTTGGCCGTCAAAGTGTTCTC
ttgtaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagcttacatgattttcatacacagtttgtaattaagaaggttcacattggtgcttccatatgttgttatctgaagATATATTAAGGAAAGAAAAGAAAAGGATCCAGACGTTGAGATTGAAGTAGCAACCAAGTTTGCTGCACTACCGTGGAGATTTGGCCGTCAAAGTGTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT