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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctacttctctttatctgcttattatgagaatgtaaaatttcttccatttttttatttgtttttttagtactaaaagttacacatttttcagGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGAC

Basic information

species Glycine max
transcript GLYMA08G41570.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163510|gb|HO012243.1|HO012243
EST:     ATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATG                         GTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCT
genomic: ATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGgtaaagctac ... catttttcagGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCT
EST: gi|120530787|gb|EH258920.1|EH258920
EST:     ATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATG                         GTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGAT
genomic: ATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGgtaaagctac ... catttttcagGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGAT
EST: gi|7673728|gb|AW160135.1|AW160135
EST:     ACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATG                         GTTGCCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGC
genomic: ACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGgtaaagctac ... catttttcagGTTG-CATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGC
EST: gi|17153134|gb|BM143067.1|BM143067
EST:     ATTCACACTGATTACTCATTTGGGTTTCCTGTGGACATGGGAGCATCATG                         GTTGCATGGAGTT
genomic: ATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGgtaaagctac ... catttttcagGTTGCATGGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttccatttttttatttgtttttttagtactaaaagttacacatttttcagGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGAC
                               tactaaa  putative branch site (score: 1)
                                             catttttc  putative PPT
         atttttttatttgttt  TA-rich tract