Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaggtttaaattgacccgtgccatgctagtttaattgagcctagttacagaattttctaattcatggatttttatatgactggtatccttttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA

Basic information

species Glycine max
transcript GLYMA08G40860.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 3
aaaggtttaaattgacccgtgccatgctagtttaattgagcctagttacagaattttctaattcatggatttttatatgactggtatccttttctt-tcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA
     |||  ||| |   |     || |  | ||  ||   | | ||  |   ||||  |  | |   | | | | || |    ||        |   |||||||||| ||| |||||||||||||||| || ||||||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||
tcctttttgtatttattggcattttgttcttgtacgtgtcaccaattgtactcttttacatgtta-acactgtcaaattatgtttacttcgccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACA

upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110983_T04 (Zea mays), 3'ss of exon 3
aaaggtttaaattgacccgtgccatgctagtttaattgagcctagttacagaattttcta--attcatggatttttata-tgactggtatccttttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA
| || | | |  |     ||  |  ||| || |   ||||| ||  ||||   ||| ||    | | | || |  |||  | |||  | |  | ||||  |||||||||||||| |||| || |||||||  || || ||||| || |||||||| |||||||| ||||||||| | ||||| ||||||||||
acagctcttagattctgtgtcactagcttgtctttctgagctta-ctacatggtttgcttctgtcctttgactgatatgctaactcctgttttattct--cagGTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACA

upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 3'ss of exon 4
aaaggtttaaattgacccgtgccatgctagtttaattgagcctagt-tacagaattttctaattcatggatttttatatgactggtatccttt-------tctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA
      |  |||||    ||   |||    |||  | |     ||   ||  |   || |  ||  ||  | |||| ||| ||| ||| || |       || ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||||| ||||| || |
------tacaattgttttgtttgatgtatttttcgtggttatgagggcacttatgattattgttggtgtgtattta-atg-ctgctatgctctgattgaatccttcagGTACGTTTAAATTGACGCTTCAGTTTACAGAGGATTATCCGAATAAGCCACCAACTGTACGCTTTGTTTCTAGAATGTTCCATCCAAATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333434|gb|FK023963.1|FK023963
EST:     TCTTTGGCCCAGATGACACCCCTTGGGATGGAG                         GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
genomic: TCTTTGGCCCAGATGACACCCCTTGGGATGGAGgtacaattat ... tttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
EST: gi|10233426|gb|BE802314.1|BE802314
EST:     CCCAGATGACACCCCTTGGGATGGAG                         GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
genomic: CCCAGATGACACCCCTTGGGATGGAGgtacaattat ... tttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
EST: gi|192297623|gb|FG989571.1|FG989571
EST:     CCCAGATGACACCCCTTGGGATGGAG                         GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
genomic: CCCAGATGACACCCCTTGGGATGGAGgtacaattat ... tttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
EST: gi|192306185|gb|FG995035.1|FG995035
EST:     CCCAGATGACACCCCTTGGGATGGAG                         GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
genomic: CCCAGATGACACCCCTTGGGATGGAGgtacaattat ... tttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
EST: gi|209721200|gb|BW665731.1|BW665731
EST:     CCCAGATGACACCCCTTGGGATGGAG                         GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC
genomic: CCCAGATGACACCCCTTGGGATGGAGgtacaattat ... tttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacagaattttctaattcatggatttttatatgactggtatccttttctttcagGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA
          ttctaat  putative branch site (score: 2)
                                       tatccttttctttc  putative PPT
      aattttctaattcatg  TA-rich tract