1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaggttgcttggaaatttatgagaatgtaaatatactattagtctattatatacagtcatggcatattccttatttgacaaattctattttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGATTACATCTGGATTACAAATGGATCACACAACACTGTTAATATAGCCTCC
species | Glycine max |
transcript | GLYMA08G40200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|120496264|gb|EH224431.1|EH224431
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGC--AAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|208317217|gb|GE111896.1|GE111896
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: GCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|209726748|gb|BW672475.1|BW672475
genomic: GCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|151399159|gb|EV269030.1|EV269030
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGCTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|13563498|gb|BG551718.1|BG551718
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|15816158|gb|BI788433.1|BI788433
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|193628535|gb|FK575847.1|FK575847
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: TTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|20449451|gb|BQ253575.1|BQ253575
genomic: TTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|7234170|gb|AW569510.1|AW569510
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|120529548|gb|EH257682.1|EH257682
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|27423463|gb|CA934983.1|CA934983
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|38192832|gb|CF922038.1|CF922038
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTACTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|120529853|gb|EH257987.1|EH257987
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|208297831|gb|GE090974.1|GE090974
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAEST: gi|208286390|gb|GE087806.1|GE087806
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGEST: gi|58018538|gb|CX705280.1|CX705280
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAG
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|208250807|gb|GE043798.1|GE043798
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAEST: gi|120533322|gb|EH261455.1|EH261455
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|9259379|gb|BE347526.1|BE347526
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|209703683|gb|BW670673.1|BW670673
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|6746775|gb|AW317231.1|AW317231
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAC AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGAEST: gi|213601870|gb|DB980222.1|DB980222
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
EST: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAG AAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
genomic: CTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGgttcattttt ... ttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGA
tattatatacagtcatggcatattccttatttgacaaattctattttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGATTACATCTGGATTACAAATGGATCACACAACACTGTTAATATAGCCTCC
atttgac putative branch site (score: 4)
ttctatttttt putative PPT
ttatttgacaaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaggttgcttggaaatttatgagaatgtaaatatactattagtctattatatacagtcatggcatattccttatttgacaaattctattttttgtgcagAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAAGGATTACATCTGGATTACAAATGGATCACACAACACTGTTAATATAGCCTCC
- aggttgc
- - - - - - - - - - - -gaatgta
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