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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccctagtttatattttaggattgaaatttgaaactcaagtctattaaaatatatgatgttatagattgaatttttatgttttggggtgaactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 3
ttccctagtttatattttaggattgaaatttgaaactcaagtctattaaaatatatgatgttatagattgaatttttatgttttgggg---tgaactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG
          ||      |      |||    ||   |  |  |  |  | | | || |   |  ||  | |||  |   || |||     ||    ||| |||| || ||  | || ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| || |
---------gtaaccagcaaccaccaaaaaaaaagtgcgtggattgttcagtgtttggt-ccaccgac-gcattgctgaattgtggcaatctgtttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
----------------------------------------ttccctagtttatattttaggattgaaatttgaaactcaagtctattaaaatatatgatgttatag------attgaatttt-tatgttttggggtgaactgtga-agGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG
                                        |||  |  |||  | ||    | | |   ||     |  | | |||||  || | |  | ||  |       | ||| || | |  || |    | |    |||  |||| || ||  | || ||||| ||||||||||| || ||||| |||||||| || || || || || ||||||||||| ||||| |||||||||||||| |
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttg-ttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724908|gb|BW669597.1|BW669597
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213597862|gb|DB958243.1|DB958243
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209711968|gb|BW679047.1|BW679047
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209699627|gb|BW655719.1|BW655719
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213619491|gb|DB969442.1|DB969442
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213589006|gb|DB973106.1|DB973106
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213602128|gb|DB962621.1|DB962621
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213611858|gb|DB964806.1|DB964806
EST:     ACCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209715301|gb|BW654188.1|BW654188
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|208173106|gb|GD967637.1|GD967637
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209719837|gb|BW674989.1|BW674989
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209699197|gb|BW656186.1|BW656186
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|120529377|gb|EH257511.1|EH257511
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209708191|gb|BW678561.1|BW678561
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209704314|gb|BW683546.1|BW683546
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGTTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|120530707|gb|EH258840.1|EH258840
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|120533051|gb|EH261184.1|EH261184
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209724195|gb|BW659729.1|BW659729
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213592503|gb|DB971645.1|DB971645
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209715019|gb|BW650870.1|BW650870
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209709691|gb|BW668227.1|BW668227
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|14205774|gb|BG839452.1|BG839452
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209728365|gb|BW660003.1|BW660003
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209700117|gb|BW652975.1|BW652975
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209726286|gb|BW680211.1|BW680211
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209716859|gb|BW682261.1|BW682261
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209708166|gb|BW673829.1|BW673829
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209718642|gb|BW662720.1|BW662720
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213587729|gb|DB955591.1|DB955591
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209715940|gb|BW650957.1|BW650957
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213597651|gb|DB962561.1|DB962561
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGGATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213606611|gb|DB972532.1|DB972532
EST:     ATCCTGAGATTGCTGATATTAGTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213617924|gb|DB957377.1|DB957377
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213601602|gb|DB972366.1|DB972366
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209721355|gb|BW654549.1|BW654549
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213599231|gb|DB962282.1|DB962282
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213597587|gb|DB962553.1|DB962553
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213617635|gb|DB969347.1|DB969347
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209727410|gb|BW651932.1|BW651932
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209727383|gb|BW651931.1|BW651931
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209725631|gb|BW663120.1|BW663120
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|213587994|gb|DB957453.1|DB957453
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209708194|gb|BW678564.1|BW678564
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|120533233|gb|EH261366.1|EH261366
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
EST: gi|209710568|gb|BW676520.1|BW676520
EST:     ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG                         GGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA
genomic: ATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAGgtatatataa ... aactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaatatatgatgttatagattgaatttttatgttttggggtgaactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG
     atatatgatgttatag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttccctagtttatattttaggattgaaatttgaaactcaagtctattaaaatatatgatgttatagattgaatttttatgttttggggtgaactgtgaagGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG

-tccctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggtg