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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaatagttatctttgtttgcagatgcatgctagaagcgcctgttggttgttggtttttcattatcttgttcactattttcatttgatgactaattatcctaatgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTTCATCTTCAACAAACAATATGCCTGCTGGGCCATCTCCAACGTCTCGGT

Basic information

species Glycine max
transcript GLYMA08G36700.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789933|gb|BG652524.1|BG652524
EST:     GTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: GTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|58017014|gb|CX703756.1|CX703756
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCNTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|5509189|gb|AI855747.1|AI855747
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|4397086|gb|AI496083.1|AI496083
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|57575109|gb|CX548084.1|CX548084
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCNTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|22524808|gb|BU083619.1|BU083619
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|208296934|gb|GE095326.1|GE095326
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|207684066|gb|GD666937.1|GD666937
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|58015077|gb|CX701819.1|CX701819
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|15813255|gb|BI785530.1|BI785530
EST:     AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAATTTTGAGGAACCCCCTGCTCCAGTT
genomic: AGAAAGCAGTGAAGAGTGGGGGGCTCGGCGCTCGTAAACTCACTAAAAAGgtatgcaaat ... tgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattatcttgttcactattttcatttgatgactaattatcctaatgaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTTCATCTTCAACAAACAATATGCCTGCTGGGCCATCTCCAACGTCTCGGT
                                       tcctaat  putative branch site (score: 2)
                tattttcatttgat  TA-rich tract