Sequence
atgc intronic sequence ATGC exonic sequencegtaatatgttgagccatttttagtagtgtgtgagattctgcatttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC
Basic information
species | Glycine max |
transcript | GLYMA08G33560.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G58140.2 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------gtaatatgttgagccatt-tttagtagtgtgtgagattctgca----tttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC
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gtatctgtttttttgcatctcttcgttaattcaacaagttttttttagccaaaaacaatgatataatttagcaaagagtgctgatccacaatctttaacatgtaatggttttgatgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207830345|gb|GD803325.1|GD803325EST: AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG CTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG
genomic: AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATGgtaatatgtt ... catttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagtagtgtgtgagattctgcatttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC
atttaat putative branch site (score: 4)
tttcattt CT-rich tract
atttacatataatcat TA-rich tract