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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgttgagccatttttagtagtgtgtgagattctgcatttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC

Basic information

species Glycine max
transcript GLYMA08G33560.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G58140.2 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------gtaatatgttgagccatt-tttagtagtgtgtgagattctgca----tttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC
                                               |  | |      |  ||  ||||| |  | |||    ||  ||    || |||| ||||  |||   |     || ||||||| || |||||||||||||||| ||||||||| |||||||| |||||| | |   | |  || ||     || | ||        |  ||    ||| 
gtatctgtttttttgcatctcttcgttaattcaacaagttttttttagccaaaaacaatgatataatttagcaaagagtgctgatccacaatctttaacatgtaatggttttgatgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207830345|gb|GD803325.1|GD803325
EST:     AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG                         CTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG
genomic: AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATGgtaatatgtt ... catttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtagtgtgtgagattctgcatttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC
                                    atttaat  putative branch site (score: 4)
                                          tttcattt  CT-rich tract
                      atttacatataatcat  TA-rich tract