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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatatatatatatatatatatatatatatatatatatatatatatatatatattgttttgatcttacgttaattgaacagtttttaaaattctcagGCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAACAGCATC

Basic information

species Glycine max
transcript GLYMA08G33520.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46492935|gb|CN472491.1|CN472491
EST:     CATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCG                         GCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCA
genomic: CATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgtaaataaca ... aaattctcagGCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatatattgttttgatcttacgttaattgaacagtttttaaaattctcagGCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAACAGCATC
                                                ttctc  CT-rich tract
                           ttaattgaacagtttt  TA-rich tract