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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgattgttttaaatttttattttattttattttattttattttatagattcatatttcatatcggccttcttctccccttttctatatatgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG

Basic information

species Glycine max
transcript GLYMA08G28320.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28320.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G52930.1 (Arabidopsis thaliana), 3'ss of exon 2
---atgattgttttaaatttttattttattttattttattttattttatagattcatatttcatatcggccttcttctccccttttctatatatgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG
     | ||||| |  |   ||| | |||     || || | | | || |   ||  | |   ||| ||     || |     ||| | | |   | |||||||| ||||| ||||||||||||||  | |||||||  |||| ||| ||||| |||||||| |||||| | ||||  || |
gtttggtttgttgtggaagcttaatatatgcatattgatgtaaatgtacaatctctgaat--gtattggttgatttgtatttgtttatgtttcc-attttcagTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTGTGAAGTTTTTGGTTAAAGCTG

upper sequence: GLYMA08G28320.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 3'ss of exon 2
atgattgttttaaatttttattttattttattttattttattttatagattcatatttcatatcggccttcttctccccttttctatatatgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG
 || |  ||  ||  | ||   |||||            ||   |     |  ||     | |  |   |  |     | |||   | | |  | ||||||||||||| || |||||||| ||| | |||||||| |||||||||||||| ||||||||||| ||| | |||  ||| |
ttggtgattaaaacatattgggttattaagagcagagaaatggaactttgttctagcctttttatgtgataattaatacattttcttttctctagttcagTGCAGGAAACAGAAAGATCTATATTTATGGATGGCCAAATGCCCCAATGGTCCATCTGTAAAATTTATGGTTGATGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181521|gb|BG352861.1|BG352861
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTTTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|27808906|gb|CB063328.1|CB063328
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTC
EST: gi|7283962|gb|AW596563.1|AW596563
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTNTATCTC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTC
EST: gi|151409158|gb|EV278966.1|EV278966
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|17021807|gb|BM092841.1|BM092841
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|298197751|gb|HO039290.1|HO039290
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|151399665|gb|EV269536.1|EV269536
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|207684827|gb|GD664730.1|GD664730
EST:     TCAACGAGCTTGTTGAGCT-AAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|213619549|gb|DB957250.1|DB957250
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|17154077|gb|BM144010.1|BM144010
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|15815223|gb|BI787498.1|BI787498
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|7458614|gb|AW666064.1|AW666064
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCT
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattcatatttcatatcggccttcttctccccttttctatatatgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG
                     ccttcttctccccttt  CT-rich tract
                                  ttttctatatatgaat  TA-rich tract