1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggattgtttactattttgtgtaattaagagactttttcatgtcacagattttccaagctaatttctgattttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTG
species | Glycine max |
transcript | GLYMA08G26180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAANNNNNNNCAGCAG ATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATEST: gi|18040286|gb|BM308580.1|BM308580
genomic: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGgtaggattgt ... ttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAT
EST: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAANNNNNNNCAGCAG ATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGGTCATAGAGATEST: gi|209726300|gb|BW659613.1|BW659613
genomic: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGgtaggattgt ... ttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAT
EST: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAANNNNNNNCAGCAG ATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAT
genomic: TAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGgtaggattgt ... ttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAT
aagagactttttcatgtcacagattttccaagctaatttctgattttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTG
ttctgat putative branch site (score: 3)
taatttctgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggattgtttactattttgtgtaattaagagactttttcatgtcacagattttccaagctaatttctgattttggaagcagATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC