1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttgcttgacattctttcggttttggcatttaaaattcgttctgtcaggagttagatattcttacctatccatgcatcactcgtgtgttaccttcctgtatgcatgtatctatcatgtatattttagtgtagcatcatgcattacaaaaatccgtttagtttttgggcctaatgtatgtgattaaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
species | Glycine max |
transcript | GLYMA08G24000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTACAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAEST: gi|16346043|gb|BI971638.1|BI971638
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAA
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16281730|gb|BI944638.1|BI944638
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|254349061|gb|GR860333.1|GR860333
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAAATEST: gi|213596302|gb|DB960231.1|DB960231
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAA-T
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGEST: gi|192327448|gb|FK019605.1|FK019605
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAG
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|37995461|gb|CF807050.1|CF807050
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: TTACGACATGATTGGTGGTTTAGACCCAGCAA-TTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|120533815|gb|EH261948.1|EH261948
genomic: TTACGACATGATTGGTGGTTTAGACC-AGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|26047693|gb|CA784406.1|CA784406
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|7028501|gb|AW458284.1|AW458284
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCANATTAAAGAAATAAAAGAT GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGACAGTCTTGGAATTEST: gi|254333837|gb|GR848755.1|GR848755
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|21594964|gb|BQ610324.1|BQ610324
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGGTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|254323845|gb|GR840378.1|GR840378
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|37994568|gb|CF806272.1|CF806272
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16281214|gb|BI944372.1|BI944372
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|151411634|gb|EV281445.1|EV281445
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|254325633|gb|GR838514.1|GR838514
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|15662663|gb|BI700034.1|BI700034
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16280447|gb|BI943967.1|BI943967
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|151412070|gb|EV281882.1|EV281882
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16284142|gb|BI945928.1|BI945928
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|7686556|gb|AW757204.1|AW757204
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAGAGTCTTGGAATTEST: gi|18734930|gb|BM528466.1|BM528466
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|120531685|gb|EH259818.1|EH259818
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGACAGTCTTGGAATTEST: gi|6134230|gb|AW132623.1|AW132623
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CTTACGACATGATTGGTGGTTTAAACCANCAAATTAAAGAAATAAAAGAA GTCATTGANTTACCAATCAAACATCCTGAEST: gi|151394633|gb|EV264504.1|EV264504
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGA
EST: CTTACGACATGATTGGTGGCTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
genomic: CTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtatgttgct ... aaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
gcattacaaaaatccgtttagtttttgggcctaatgtatgtgattaaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
gcctaat putative branch site (score: 3)
tttagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcttgacattctttcggttttggcatttaaaattcgttctgtcaggagttagatattcttacctatccatgcatcactcgtgtgttaccttcctgtatgcatgtatctatcatgtatattttagtgtagcatcatgcattacaaaaatccgtttagtttttgggcctaatgtatgtgattaaatgtacagGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT