Sequence
atgc intronic sequence ATGC exonic sequence...cttccaagtttaatcacttgtttcctttaaaagtttaataattaataaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG
Basic information
species | Glycine max |
transcript | GLYMA08G22430.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22430.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G880300_T02 (Zea mays), 3'ss of exon 5
-cttccaagtttaatcacttgtttcctttaaaagtttaataattaataaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG
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tctttagcatgcaacttgctagcccaggtggcagtcaaatcctggatccgcccctggttctcaatatcaatgtcactgttaatt-tattttgttggtgcagTAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGGTCTGACATCATATTAAGCTTGCACCAG
upper sequence: GLYMA08G22430.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G080722_T02 (Zea mays), 3'ss of exon 5
cttccaagtttaatcacttgtttcctttaaaagtttaata----attaataaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG---------------------
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----tagattatatatgatgcatcattcagatgctgcttatgccattttcagctaatgcttacactttataagtttcaatgtttactttcttttatttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGGATCTGATATCATACTCACCATGCACCAGGCAAGGCTTTAAACTTTTAAT
upper sequence: GLYMA08G22430.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G080722_T01 (Zea mays), 3'ss of exon 5
cttccaagtttaatcacttgtttcctttaaaagtttaata----attaataaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG
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----tagattatatatgatgcatcattcagatgctgcttatgccattttcagctaatgcttacactttataagtttcaatgtttactttcttttatttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGGATCTGATATCATACTCACCATGCACCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23732715|gb|BU764528.1|BU764528EST: TCCACAATGTGGATTTAGTTCGCTTGCTGTAAGAGTTTTAAAACACTATG TAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGG
genomic: TCCACAATGTGGATTTAGTTCGCTTGCTGTAAGAGTTTTAAAACACTATGgtaagtacta ... ttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG
tatcctactgttctcc CT-rich tract
atttttttaatgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttccaagtttaatcacttgtttcctttaaaagtttaataattaataaataacgatttttttaatgatatcctactgttctccctgttctttctgtgcagTAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ttccaag
- - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - - - ataaataa