Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaataaactttcctattctgcttttgtacaaacatattctcactttatccctataatattctgataaatctattctcgtgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
Basic information
species | Glycine max |
transcript | GLYMA08G22420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22420.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G15650.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaaataaactttcctattctgcttttgtacaaacatattctcactttatccctataatattctgataaatctattctcgtgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
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--------------------gtaaggatccatggaaacaaacttggaagtaattttt----tgtatcactaaa--tattctta---gtgaaggttctgataaaagatatatggtattctg--tcagATCAAATGGATTTGTCCAACTGCTCCTTCGCGTCCTGTTTCGCTTCTCGGTGGATTTCCTTGCACTGCCT
upper sequence: GLYMA08G22420.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaaataaactttcctattctgcttttgtacaaacatattctcactttatccctataatattctgataaatctattctcgtgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
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-------------------gtaagaatctatcatacatgttttgttataagtccaccattaaatgaaagtgcatctctattgaagtctttaataaa-aacatatgt----atgctatgc---acagATAAAATGGATTTGTCCAACCGCTCCTTCGCGTCCTGTTACAAGTCTTGGTGGATTTACATGCACTGCTT
upper sequence: GLYMA08G22420.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaaataaactttcctattctgcttttgtacaaacatattctcactttatccctataatattctgataaatctattctcg-tgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
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---------------------------------------------------gtaaggatt-tgtttttttaaattgcttttgggcttataaaaccacaaatcttactgttcaaattctatgatgcagATAAAATGGATTTGTCCAACTGCTCCTACTCGTCCTGTTGCAGTACTCGGTGGATTTCCTTGCACTGCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14011490|gb|BG726412.1|BG726412EST: CTCTTATCAGCTGCTGGAATCTCTTACACTTACAAAT ATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGT
genomic: CTCTTATCAGCTGCTGGAATCTCTTCCACTTCCAAATgtaagaaata ... tgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatctattctcgtgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
aaaatatatgatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaataaactttcctattctgcttttgtacaaacatattctcactttatccctataatattctgataaatctattctcgtgtacaaaatatatgatgtttgttatgatgtgatgtggtgcagATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG